Tree and sequence alignment visualizations have a long history. Evolutionary tree diagrams can be found in even the earliest descriptions of evolution, and their visualization still plays a key role ...
In bioinformatics, multiple sequence alignment (MSA) is an NP-hard problem. Nature-inspired approaches can provide an approximate solution compared to conventional approaches. In this article, the MSA ...
Kevin Liu, Tandy J. Warnow, Mark T. Holder, Serita M. Nelesen, Jiaye Yu, Alexandros P. Stamatakis and C. Randal Linder Highly accurate estimation of phylogenetic trees for large data sets is difficult ...
Abstract: Molecular Biologists frequently compute multiple sequence alignments (MSAs) to identify similar regions in protein families. Progressive alignment is a widely used approach to compute MSAs.
Abstract: This paper presents an approach to the multiple sequence alignment (MSA) problem by applying genetic algorithms with a reserve selection mechanism. MSA is one of the most fundamental ...
Sequence logos are a common way to visually represent amino acid frequencies and conserved sequence patterns of multiple sequence alignments (MSAs). MSA Class Logos is a free web server that enables ...
RASCAL is a tool designed to realign multiple sequence alignments. It was originally developed with an older version of the C/C++ standard. With the recent transition to C++11, the software required ...
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